Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mtrab system response regulator mtra | VO01_RS04105 | Not Available | Positive | 846855 - 847535 | 24707.9 |
| mtrab system histidine kinase mtrb | VO01_RS04110 | Not Available | Positive | 847540 - 849174 | 59709.9 |
| lipoprotein lpqb | VO01_RS04115 | Not Available | Positive | 849158 - 850885 | 59565.6 |
| comf family protein | VO01_RS04120 | Not Available | Positive | 850947 - 851765 | 27569.0 |
| ribosome hibernation-promoting factor, hpf/yfia family | VO01_RS04125 | Not Available | Positive | 851920 - 852609 | 25228.8 |
| preprotein translocase subunit seca | VO01_RS04130 | Not Available | Positive | 852809 - 855634 | 104671.0 |
| rv3235 family protein | VO01_RS17740 | Not Available | Negative | 855744 - 855836 | 3429.28 |
| 30s ribosomal protein s6 | VO01_RS04135 | Not Available | Negative | 855937 - 856332 | 14059.5 |
| hypothetical protein | VO01_RS04140 | Not Available | Positive | 856540 - 857145 | 22690.2 |
| hypothetical protein | VO01_RS04145 | Not Available | Positive | 857215 - 857847 | 21266.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
