Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| whib family transcriptional regulator | VO01_RS04010 | Not Available | Positive | 824240 - 824557 | 11726.7 |
| glycosyltransferase family 2 protein | VO01_RS04015 | Not Available | Positive | 824651 - 827731 | 105723.0 |
| duf5719 family protein | VO01_RS04020 | Not Available | Positive | 827718 - 829235 | 48694.9 |
| metallopeptidase family protein | VO01_RS04025 | Not Available | Negative | 829312 - 829755 | 16993.0 |
| duf3499 family protein | VO01_RS04030 | Not Available | Positive | 829801 - 830022 | 7747.12 |
| phosphomannomutase/phosphoglucomutase | VO01_RS04035 | Not Available | Positive | 830019 - 831446 | 50132.2 |
| metal-sensitive transcriptional regulator | VO01_RS04040 | Not Available | Positive | 831595 - 831876 | 10200.2 |
| heavy-metal-associated domain-containing protein | VO01_RS04045 | Not Available | Positive | 831921 - 832136 | 7123.36 |
| heavy metal translocating p-type atpase | VO01_RS04050 | Not Available | Positive | 832138 - 834567 | 82516.8 |
| adenosylhomocysteinase | VO01_RS04055 | Not Available | Positive | 834630 - 836114 | 53740.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
