Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyltransferase | VO01_RS03960 | Not Available | Positive | 810833 - 811681 | 31561.2 |
| udp-galactopyranose mutase | VO01_RS03965 | Not Available | Positive | 811749 - 812912 | 44261.7 |
| glycosyltransferase | VO01_RS03970 | Not Available | Positive | 812912 - 814930 | 74871.2 |
| hypothetical protein | VO01_RS03975 | Not Available | Positive | 815052 - 816905 | 64352.6 |
| gtra family protein | VO01_RS03980 | Not Available | Positive | 817050 - 817520 | 17478.8 |
| o-antigen ligase family protein | VO01_RS03985 | Not Available | Negative | 817548 - 818840 | 45863.3 |
| o-antigen ligase | VO01_RS03990 | Not Available | Negative | 818889 - 820334 | 51407.6 |
| acyl-coa dehydrogenase family protein | VO01_RS03995 | Not Available | Negative | 820436 - 821614 | 42553.2 |
| mannose-6-phosphate isomerase, class i | VO01_RS04000 | Not Available | Positive | 821780 - 823087 | 45955.6 |
| udp-glucose 4-epimerase gale | VO01_RS04005 | Not Available | Positive | 823122 - 824090 | 34298.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
