Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dtdp-4-dehydrorhamnose reductase | VO01_RS03910 | Not Available | Negative | 800327 - 801181 | 29549.5 |
| dtdp-glucose 4,6-dehydratase | VO01_RS03915 | Not Available | Negative | 801178 - 802167 | 36817.1 |
| gtra family protein | VO01_RS03920 | Not Available | Positive | 802348 - 802800 | 16071.2 |
| dtdp-4-dehydrorhamnose 3,5-epimerase family protein | VO01_RS03925 | Not Available | Positive | 802826 - 803431 | 22077.0 |
| glucose-1-phosphate thymidylyltransferase rfba | VO01_RS03930 | Not Available | Positive | 803435 - 804298 | 31708.9 |
| nad-dependent epimerase/dehydratase family protein | VO01_RS03935 | Not Available | Negative | 804324 - 805301 | 34201.2 |
| glycosyltransferase | VO01_RS03940 | Not Available | Negative | 805298 - 806329 | 36966.5 |
| glycosyltransferase family 2 protein | VO01_RS03945 | Not Available | Negative | 806326 - 807180 | 31113.1 |
| hypothetical protein | VO01_RS03950 | Not Available | Positive | 807453 - 809666 | 78557.0 |
| glycosyltransferase | VO01_RS03955 | Not Available | Positive | 809663 - 810625 | 34383.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
