Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | VO01_RS03810 | Not Available | Negative | 780933 - 781337 | 13835.8 |
| hypothetical protein | VO01_RS03815 | Not Available | Positive | 781671 - 782195 | 17751.1 |
| acetyl/propionyl/methylcrotonyl-coa carboxylase subunit alpha | VO01_RS03820 | Not Available | Negative | 782219 - 783988 | 62297.6 |
| hypothetical protein | VO01_RS03825 | Not Available | Positive | 784111 - 784638 | 18993.6 |
| 30s ribosomal protein s6 | VO01_RS03830 | Not Available | Negative | 784661 - 785311 | 22584.0 |
| class i sam-dependent rna methyltransferase | VO01_RS03835 | Not Available | Positive | 785436 - 786683 | 45105.2 |
| response regulator transcription factor | VO01_RS03840 | Not Available | Positive | 786783 - 787487 | 24489.1 |
| sensor histidine kinase | VO01_RS03845 | Not Available | Positive | 787522 - 788823 | 45670.4 |
| hypothetical protein | VO01_RS03850 | Not Available | Positive | 788820 - 789842 | 36603.4 |
| acyl-coa carboxylase subunit epsilon | VO01_RS03855 | Not Available | Negative | 790115 - 790348 | 7829.16 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
