Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | VO01_RS17205 | Not Available | Negative | 30482 - 30871 | 13954.4 |
| is481-like element is1122 family transposase | VO01_RS15725 | Not Available | Positive | 31294 - 32253 | 36001.6 |
| hypothetical protein | VO01_RS16435 | Not Available | Positive | 33102 - 33797 | 25352.7 |
| para family protein | VO01_RS15740 | Not Available | Positive | 33948 - 34565 | 22237.7 |
| hypothetical protein | VO01_RS15745 | Not Available | Positive | 34562 - 34906 | 12188.3 |
| single-stranded dna-binding protein | VO01_RS16860 | Not Available | Positive | 34957 - 35688 | 26810.3 |
| hypothetical protein | VO01_RS17530 | Not Available | Positive | 35769 - 35918 | 5420.37 |
| hypothetical protein | VO01_RS15755 | Not Available | Negative | 35915 - 36271 | 13337.7 |
| histone-like nucleoid-structuring protein lsr2 | VO01_RS15760 | Not Available | Negative | 36383 - 36730 | 12504.5 |
| dna cytosine methyltransferase | VO01_RS15765 | Not Available | Negative | 37185 - 38462 | 47353.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
