Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| succinate dehydrogenase, cytochrome b556 subunit | VO01_RS03715 | Not Available | Negative | 760217 - 760645 | 15929.9 |
| glycosyltransferase family 4 protein | VO01_RS03720 | Not Available | Negative | 760794 - 761969 | 41441.7 |
| mannose-1-phosphate guanylyltransferase | VO01_RS03725 | Not Available | Positive | 762087 - 763208 | 39691.5 |
| bmp family protein | VO01_RS03730 | Not Available | Positive | 763283 - 764356 | 36598.5 |
| bmp family protein | VO01_RS03735 | Not Available | Positive | 764507 - 765601 | 37083.3 |
| abc transporter atp-binding protein | VO01_RS03740 | Not Available | Positive | 765683 - 767224 | 54742.2 |
| abc transporter permease | VO01_RS03745 | Not Available | Positive | 767221 - 768582 | 46422.5 |
| abc transporter permease | VO01_RS03750 | Not Available | Positive | 768579 - 769883 | 44882.9 |
| cytidine deaminase | VO01_RS03755 | Not Available | Positive | 769880 - 770311 | 14774.8 |
| thymidine phosphorylase | VO01_RS03760 | Not Available | Positive | 770308 - 771606 | 45524.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
