Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | VO01_RS03665 | Not Available | Negative | 748040 - 748636 | 22221.1 |
| hypothetical protein | VO01_RS03670 | Not Available | Negative | 748679 - 749452 | 27347.1 |
| hypothetical protein | VO01_RS16275 | Not Available | Negative | 749457 - 751451 | 67415.3 |
| Trna-arg | Not Available | Not Available | Positive | 751595 - 751669 | Not Available |
| duf4011 domain-containing protein | VO01_RS03685 | Not Available | Positive | 751904 - 755629 | 134764.0 |
| hypothetical protein | VO01_RS03690 | Not Available | Positive | 755629 - 755874 | 8444.5 |
| is481-like element is1122 family transposase | VO01_RS03695 | Not Available | Positive | 756023 - 756982 | 36001.6 |
| succinate dehydrogenase iron-sulfur subunit | VO01_RS03700 | Not Available | Negative | 757073 - 757834 | 28411.9 |
| succinate dehydrogenase flavoprotein subunit | VO01_RS03705 | Not Available | Negative | 757893 - 759716 | 66424.6 |
| succinate dehydrogenase hydrophobic membrane anchor subunit | VO01_RS03710 | Not Available | Negative | 759750 - 760214 | 16967.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
