Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | VO01_RS03615 | Not Available | Negative | 737634 - 737915 | 9407.88 |
| hypothetical protein | VO01_RS03620 | Not Available | Negative | 737938 - 738336 | 13779.3 |
| duf2256 and duf3253 domain-containing protein | VO01_RS03625 | Not Available | Negative | 738353 - 738751 | 14884.6 |
| efflux rnd transporter permease subunit | VO01_RS03630 | Not Available | Positive | 738940 - 742194 | 111173.0 |
| dead/deah box helicase | VO01_RS03635 | Not Available | Positive | 742514 - 744703 | 80876.3 |
| is481-like element is1122 family transposase | VO01_RS03640 | Not Available | Negative | 744714 - 745676 | 36074.7 |
| hypothetical protein | VO01_RS03645 | Not Available | Negative | 745758 - 746075 | 10728.3 |
| hypothetical protein | VO01_RS03650 | Not Available | Negative | 746072 - 746650 | 21441.4 |
| hypothetical protein | VO01_RS03655 | Not Available | Negative | 746697 - 747350 | 24230.3 |
| hypothetical protein | VO01_RS17575 | Not Available | Negative | 747338 - 747784 | 16276.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
