Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fad-dependent oxidoreductase | VO01_RS03565 | Not Available | Positive | 725424 - 726554 | 40281.2 |
| duf3618 domain-containing protein | VO01_RS03570 | Not Available | Negative | 726862 - 727425 | 19053.0 |
| phage holin family protein | VO01_RS03575 | Not Available | Negative | 727422 - 727841 | 14588.8 |
| hypothetical protein | VO01_RS03580 | Not Available | Negative | 727838 - 728701 | 28869.7 |
| apc family permease | VO01_RS03585 | Not Available | Negative | 728852 - 730912 | 73980.4 |
| ycze/yyas/yitt family protein | VO01_RS03590 | Not Available | Negative | 731001 - 731666 | 23359.3 |
| plp-dependent aminotransferase family protein | VO01_RS03595 | Not Available | Positive | 731730 - 733172 | 50330.5 |
| trypsin-like serine peptidase | VO01_RS03600 | Not Available | Positive | 733270 - 734286 | 34585.5 |
| glycogen debranching protein glgx | VO01_RS03605 | Not Available | Positive | 734391 - 736472 | 76258.1 |
| fusc family protein | VO01_RS03610 | Not Available | Positive | 736600 - 737664 | 36254.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
