Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gfo/idh/moca family protein | VO01_RS03425 | Not Available | Negative | 697457 - 698470 | 36016.9 |
| gfo/idh/moca family oxidoreductase | VO01_RS03430 | Not Available | Negative | 698457 - 699494 | 37430.9 |
| hypothetical protein | VO01_RS03435 | Not Available | Negative | 699485 - 701032 | 54917.1 |
| aldo/keto reductase | VO01_RS03440 | Not Available | Negative | 701177 - 702166 | 35164.6 |
| fur family transcriptional regulator | VO01_RS03445 | Not Available | Positive | 702292 - 702777 | 16778.9 |
| catalase | VO01_RS03450 | Not Available | Positive | 702855 - 704384 | 56698.8 |
| hypothetical protein | VO01_RS16630 | Not Available | Negative | 704477 - 705061 | 21746.9 |
| gnat family n-acetyltransferase | VO01_RS03455 | Not Available | Negative | 705054 - 705686 | 23243.5 |
| gnat family n-acetyltransferase | VO01_RS03460 | Not Available | Negative | 705683 - 706258 | 20014.8 |
| ai-2e family transporter | VO01_RS03465 | Not Available | Positive | 706345 - 707502 | 40252.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
