Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fad-dependent thymidylate synthase | VO01_RS03375 | Not Available | Positive | 686789 - 687685 | 33248.0 |
| aaa family atpase | VO01_RS16270 | Not Available | Positive | 687752 - 688300 | 19860.8 |
| mfs transporter | VO01_RS03385 | Not Available | Positive | 688405 - 689589 | 40780.6 |
| beta-1,6-n-acetylglucosaminyltransferase | VO01_RS03390 | Not Available | Positive | 689586 - 690491 | 33586.9 |
| ntaa/dmoa family fmn-dependent monooxygenase | VO01_RS03395 | Not Available | Positive | 690497 - 691822 | 49393.6 |
| gntr family transcriptional regulator | VO01_RS03400 | Not Available | Negative | 692299 - 692973 | 24718.6 |
| carbon-nitrogen hydrolase family protein | VO01_RS03405 | Not Available | Positive | 693002 - 693841 | 28652.9 |
| mfs permease | VO01_RS03410 | Not Available | Negative | 693848 - 695020 | 38873.4 |
| class i trna ligase family protein | VO01_RS03415 | Not Available | Negative | 695017 - 696198 | 40138.0 |
| b12-binding domain-containing radical sam protein | VO01_RS03420 | Not Available | Negative | 696198 - 697460 | 45936.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
