Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sgnh/gdsl hydrolase family protein | VO01_RS03325 | Not Available | Negative | 675473 - 676183 | 25048.8 |
| endonuclease/exonuclease/phosphatase family protein | VO01_RS03330 | Not Available | Negative | 676384 - 677436 | 37402.3 |
| dienelactone hydrolase family protein | VO01_RS03335 | Not Available | Negative | 677684 - 678481 | 28178.3 |
| phosphoribosylformylglycinamidine synthase subunit purl | VO01_RS03340 | Not Available | Negative | 678478 - 680844 | 83930.3 |
| phosphoribosylformylglycinamidine synthase subunit purq | VO01_RS03345 | Not Available | Negative | 680841 - 681536 | 24404.0 |
| 30s ribosomal protein s6 | VO01_RS18095 | Not Available | Negative | 681689 - 681928 | 8499.35 |
| 30s ribosomal protein s6 | VO01_RS03355 | Not Available | Negative | 682049 - 682937 | 32696.9 |
| mfs transporter | VO01_RS03360 | Not Available | Positive | 682892 - 684295 | 49383.0 |
| radical sam protein | VO01_RS03365 | Not Available | Positive | 684604 - 685458 | 31478.4 |
| glycosyltransferase | VO01_RS03370 | Not Available | Positive | 685440 - 686792 | 49621.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
