Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sco6880 family protein | VO01_RS15680 | Not Available | Negative | 19868 - 21397 | 54754.5 |
| hypothetical protein | VO01_RS16850 | Not Available | Negative | 21390 - 22673 | 41254.9 |
| hypothetical protein | VO01_RS17945 | Not Available | Negative | 22676 - 23107 | 14975.5 |
| hypothetical protein | VO01_RS17950 | Not Available | Negative | 23808 - 24074 | 9329.52 |
| alpha/beta hydrolase family protein | VO01_RS15695 | Not Available | Negative | 24617 - 25783 | 41387.7 |
| hypothetical protein | VO01_RS15700 | Not Available | Negative | 25783 - 26763 | 35619.7 |
| hypothetical protein | VO01_RS15705 | Not Available | Negative | 26764 - 27213 | 16788.9 |
| hypothetical protein | VO01_RS15710 | Not Available | Negative | 27270 - 27854 | 20383.8 |
| hypothetical protein | VO01_RS15715 | Not Available | Positive | 28138 - 28380 | 8773.57 |
| helix-turn-helix domain-containing protein | VO01_RS15720 | Not Available | Positive | 28611 - 30464 | 66778.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
