Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| o-antigen polymerase | VO01_RS03275 | Not Available | Negative | 661716 - 663428 | 60277.7 |
| polysaccharide pyruvyl transferase family protein | VO01_RS03280 | Not Available | Negative | 663407 - 664456 | 36702.7 |
| polysaccharide exporter | VO01_RS03285 | Not Available | Negative | 664453 - 665643 | 41262.7 |
| glycosyltransferase family 4 protein | VO01_RS03290 | Not Available | Negative | 665640 - 666686 | 37901.2 |
| glycosyltransferase | VO01_RS03295 | Not Available | Negative | 666686 - 667816 | 40479.9 |
| sugar transferase | VO01_RS03300 | Not Available | Negative | 667816 - 669291 | 54039.1 |
| low molecular weight phosphatase family protein | VO01_RS03305 | Not Available | Negative | 669381 - 670100 | 25788.4 |
| polysaccharide biosynthesis tyrosine autokinase | VO01_RS03310 | Not Available | Negative | 670110 - 671522 | 49968.2 |
| acyltransferase family protein | VO01_RS03315 | Not Available | Positive | 671737 - 674016 | 80327.2 |
| acyltransferase family protein | VO01_RS03320 | Not Available | Negative | 674345 - 675382 | 37796.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
