Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| voc family protein | VO01_RS03220 | Not Available | Positive | 651394 - 651789 | 14333.7 |
| serine hydrolase domain-containing protein | VO01_RS03225 | Not Available | Positive | 651888 - 653951 | 70828.1 |
| sensor histidine kinase | VO01_RS03230 | Not Available | Positive | 654005 - 655354 | 45448.1 |
| response regulator | VO01_RS03235 | Not Available | Positive | 655351 - 656031 | 24039.9 |
| organic hydroperoxide resistance protein | VO01_RS03245 | Not Available | Positive | 656191 - 656610 | 14460.7 |
| chorismate mutase | VO01_RS03250 | Not Available | Positive | 656694 - 657077 | 13623.0 |
| rimk family alpha-l-glutamate ligase | VO01_RS03255 | Not Available | Negative | 657119 - 658102 | 35281.6 |
| endonuclease/exonuclease/phosphatase family protein | VO01_RS03260 | Not Available | Negative | 658195 - 659016 | 30622.5 |
| ydcf family protein | VO01_RS03265 | Not Available | Negative | 659085 - 659672 | 21616.9 |
| duf4012 domain-containing protein | VO01_RS03270 | Not Available | Negative | 659833 - 661719 | 66594.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
