Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| redox-sensitive transcriptional activator soxr | VO01_RS03080 | Not Available | Negative | 621577 - 622065 | 17896.6 |
| ferredoxin | VO01_RS03085 | Not Available | Positive | 622172 - 622498 | 11769.8 |
| flavin reductase family protein | VO01_RS03090 | Not Available | Positive | 622495 - 622989 | 17026.2 |
| lamg-like jellyroll fold domain-containing protein | VO01_RS03095 | Not Available | Negative | 623012 - 624940 | 68042.2 |
| voc family protein | VO01_RS03100 | Not Available | Negative | 625006 - 625446 | 15720.4 |
| hd domain-containing protein | VO01_RS03105 | Not Available | Positive | 625452 - 626057 | 21476.4 |
| hypothetical protein | VO01_RS17315 | Not Available | Negative | 626225 - 626899 | 24333.6 |
| yhge/pip family protein | VO01_RS03115 | Not Available | Negative | 626982 - 629087 | 70207.6 |
| hypothetical protein | VO01_RS03120 | Not Available | Negative | 629084 - 629749 | 22585.9 |
| tetr/acrr family transcriptional regulator | VO01_RS03125 | Not Available | Negative | 629746 - 630426 | 23812.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
