Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tetr family transcriptional regulator | VO01_RS02985 | Not Available | Negative | 604418 - 605017 | 22090.1 |
| mfs transporter | VO01_RS02990 | Not Available | Positive | 605078 - 606670 | 54591.4 |
| llm class flavin-dependent oxidoreductase | VO01_RS02995 | Not Available | Negative | 606755 - 607774 | 36409.6 |
| llm class flavin-dependent oxidoreductase | VO01_RS03000 | Not Available | Negative | 607802 - 608860 | 36444.8 |
| quinone oxidoreductase family protein | VO01_RS03005 | Not Available | Negative | 608895 - 609860 | 33390.7 |
| hypothetical protein | VO01_RS03010 | Not Available | Negative | 609892 - 610455 | 20709.1 |
| hypothetical protein | VO01_RS03015 | Not Available | Negative | 610550 - 611188 | 21414.4 |
| cysteine synthase a | VO01_RS03020 | Not Available | Positive | 611514 - 612452 | 32795.4 |
| serine o-acetyltransferase epsc | VO01_RS03025 | Not Available | Positive | 612455 - 613039 | 20210.8 |
| trmh family rna methyltransferase | VO01_RS03030 | Not Available | Positive | 613039 - 613713 | 24554.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
