Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nad-dependent epimerase/dehydratase family protein | VO01_RS02935 | Not Available | Negative | 596018 - 596902 | 31656.4 |
| hypothetical protein | VO01_RS02940 | Not Available | Negative | 596899 - 597309 | 15019.6 |
| benzoate/h(+) symporter bene family transporter | VO01_RS02945 | Not Available | Negative | 597306 - 598541 | 40293.7 |
| m23 family metallopeptidase | VO01_RS02950 | Not Available | Positive | 598802 - 600061 | 42648.6 |
| sgnh/gdsl hydrolase family protein | VO01_RS02955 | Not Available | Positive | 600099 - 600833 | 26424.1 |
| srpbcc family protein | VO01_RS02960 | Not Available | Positive | 600997 - 601452 | 16968.6 |
| hypothetical protein | VO01_RS02965 | Not Available | Positive | 601455 - 601691 | 9018.46 |
| rdd family protein | VO01_RS02970 | Not Available | Positive | 601831 - 602640 | 28513.1 |
| alkene reductase | VO01_RS02975 | Not Available | Positive | 602829 - 603905 | 38092.0 |
| tigr02611 family protein | VO01_RS02980 | Not Available | Negative | 603970 - 604326 | 13781.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
