Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| copper resistance protein copc | VO01_RS02840 | Not Available | Positive | 572804 - 573640 | 25730.7 |
| lysr substrate-binding domain-containing protein | VO01_RS02845 | Not Available | Negative | 573730 - 574632 | 32876.6 |
| proline dehydrogenase family protein | VO01_RS02850 | Not Available | Positive | 574806 - 578456 | 130955.0 |
| hypothetical protein | VO01_RS17305 | Not Available | Negative | 578512 - 578664 | 5291.37 |
| membrane protein | VO01_RS02855 | Not Available | Positive | 578663 - 579325 | 23851.2 |
| hypothetical protein | VO01_RS17720 | Not Available | Positive | 579346 - 579747 | 13526.2 |
| phosphate/phosphite/phosphonate abc transporter substrate-binding protein | VO01_RS02865 | Not Available | Positive | 579801 - 580721 | 31928.2 |
| phosphonate abc transporter atp-binding protein | VO01_RS02870 | Not Available | Positive | 580706 - 581563 | 29953.3 |
| phne/ptxc family abc transporter permease | VO01_RS02875 | Not Available | Positive | 581560 - 583326 | 59748.4 |
| tigr03364 family fad-dependent oxidoreductase | VO01_RS02880 | Not Available | Positive | 583323 - 584534 | 41672.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
