Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aaa family atpase | VO01_RS18060 | Not Available | Positive | 9904 - 10347 | 16015.3 |
| aaa family atpase | VO01_RS16430 | Not Available | Positive | 10247 - 12718 | 89116.6 |
| duf4913 domain-containing protein | VO01_RS15640 | Not Available | Negative | 12776 - 13219 | 16929.0 |
| type iv secretory system conjugative dna transfer family protein | VO01_RS15645 | Not Available | Negative | 13317 - 14954 | 59526.8 |
| hypothetical protein | VO01_RS15650 | Not Available | Negative | 14954 - 15193 | 8691.19 |
| hypothetical protein | VO01_RS15655 | Not Available | Negative | 15196 - 15525 | 11889.7 |
| c40 family peptidase | VO01_RS15660 | Not Available | Negative | 15561 - 16460 | 31329.8 |
| hypothetical protein | VO01_RS15665 | Not Available | Negative | 16608 - 17093 | 16612.5 |
| mind/para family protein | VO01_RS15670 | Not Available | Negative | 17103 - 18353 | 43695.7 |
| hypothetical protein | VO01_RS15675 | Not Available | Negative | 18363 - 19868 | 54398.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
