Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uroporphyrinogen decarboxylase | VO01_RS02690 | Not Available | Positive | 544606 - 545733 | 39575.6 |
| protoporphyrinogen oxidase | VO01_RS02695 | Not Available | Positive | 545726 - 547165 | 48556.9 |
| hypothetical protein | VO01_RS02700 | Not Available | Positive | 547293 - 547634 | 11616.7 |
| phage holin family protein | VO01_RS02705 | Not Available | Positive | 547667 - 548083 | 14912.5 |
| duf3618 domain-containing protein | VO01_RS02710 | Not Available | Positive | 548073 - 548348 | 9834.92 |
| polyprenol phosphomannose-dependent alpha 1,6 mannosyltransferase mptb | VO01_RS02715 | Not Available | Positive | 548445 - 550007 | 52882.3 |
| tigr03086 family metal-binding protein | VO01_RS02720 | Not Available | Positive | 550095 - 550658 | 21030.6 |
| hydrogen peroxide-dependent heme synthase | VO01_RS02725 | Not Available | Positive | 550728 - 551498 | 28871.1 |
| ferrochelatase | VO01_RS02730 | Not Available | Positive | 551498 - 552748 | 45270.2 |
| hydroxymethylbilane synthase | VO01_RS02735 | Not Available | Positive | 552745 - 553731 | 33663.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
