Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| c-type cytochrome biogenesis protein ccsb | VO01_RS02640 | Not Available | Positive | 536458 - 537483 | 37043.6 |
| o-succinylbenzoate synthase | VO01_RS02645 | Not Available | Negative | 537514 - 538497 | 35462.6 |
| 1,4-dihydroxy-2-naphthoyl-coa synthase | VO01_RS02650 | Not Available | Positive | 538552 - 539463 | 33483.5 |
| amp-binding protein | VO01_RS02655 | Not Available | Positive | 539483 - 540667 | 40737.7 |
| csbd family protein | VO01_RS02660 | Not Available | Negative | 540767 - 540940 | 5856.71 |
| hypothetical protein | VO01_RS02665 | Not Available | Positive | 541073 - 541384 | 10121.2 |
| nudix hydrolase | VO01_RS02670 | Not Available | Negative | 541374 - 541919 | 19391.8 |
| gnat family n-acetyltransferase | VO01_RS02675 | Not Available | Negative | 541928 - 542533 | 21431.7 |
| gnat family n-acetyltransferase | VO01_RS02680 | Not Available | Negative | 542548 - 543186 | 24179.9 |
| glutamyl-trna reductase | VO01_RS02685 | Not Available | Negative | 543183 - 544502 | 45681.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
