Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| potassium channel family protein | VO01_RS02505 | Not Available | Negative | 510871 - 511539 | 23997.0 |
| trkh family potassium uptake protein | VO01_RS02510 | Not Available | Negative | 511593 - 513017 | 50991.9 |
| arsr/smtb family transcription factor | VO01_RS02515 | Not Available | Positive | 513096 - 513644 | 19292.4 |
| helix-turn-helix domain-containing protein | VO01_RS02520 | Not Available | Positive | 513767 - 514006 | 8546.31 |
| 30s ribosomal protein bs22 | VO01_RS16600 | Not Available | Positive | 514079 - 514177 | 4083.36 |
| 30s ribosomal protein s6 | VO01_RS18090 | Not Available | Negative | 514554 - 514754 | 7193.42 |
| hypothetical protein | VO01_RS17710 | Not Available | Negative | 514777 - 514920 | 4934.01 |
| glutaredoxin family protein | VO01_RS02530 | Not Available | Positive | 514998 - 515261 | 9481.38 |
| dabb family protein | VO01_RS02535 | Not Available | Positive | 515299 - 515601 | 10915.8 |
| laci family dna-binding transcriptional regulator | VO01_RS17715 | Not Available | Positive | 515603 - 515800 | 6724.88 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
