Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| had family hydrolase | VO01_RS02350 | Not Available | Positive | 484744 - 485565 | 29847.4 |
| Trna-ser | Not Available | Not Available | Positive | 485737 - 485821 | Not Available |
| lcp family protein | VO01_RS02360 | Not Available | Positive | 485838 - 487097 | 42990.4 |
| Trna-ser | Not Available | Not Available | Positive | 487520 - 487611 | Not Available |
| hypothetical protein | VO01_RS02370 | Not Available | Positive | 487711 - 488256 | 18644.9 |
| laci family dna-binding transcriptional regulator | VO01_RS02375 | Not Available | Positive | 488320 - 489390 | 37611.9 |
| thua domain-containing protein | VO01_RS02380 | Not Available | Positive | 489562 - 490260 | 25654.2 |
| gfo/idh/moca family protein | VO01_RS02385 | Not Available | Positive | 490278 - 491354 | 37494.4 |
| hypothetical protein | VO01_RS02390 | Not Available | Positive | 491446 - 491814 | 13293.8 |
| alpha-amylase family protein | VO01_RS02395 | Not Available | Negative | 491852 - 493207 | 48516.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
