Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ardc-like ssdna-binding domain-containing protein | VO01_RS15595 | Not Available | Positive | 1389 - 2291 | 33149.7 |
| hypothetical protein | VO01_RS17395 | Not Available | Positive | 2766 - 2927 | 5634.33 |
| single-stranded dna-binding protein | VO01_RS17935 | Not Available | Positive | 2954 - 3709 | 27074.4 |
| hypothetical protein | VO01_RS15605 | Not Available | Positive | 3712 - 4233 | 18200.8 |
| hnh endonuclease family protein | VO01_RS15610 | Not Available | Positive | 4230 - 5003 | 27191.4 |
| hypothetical protein | VO01_RS15615 | Not Available | Positive | 5029 - 5409 | 13566.6 |
| hypothetical protein | VO01_RS16425 | Not Available | Positive | 5486 - 6736 | 44586.6 |
| hypothetical protein | VO01_RS15625 | Not Available | Positive | 6953 - 7441 | 18725.3 |
| hypothetical protein | VO01_RS15630 | Not Available | Negative | 7462 - 7779 | 10782.5 |
| mobf family relaxase | VO01_RS17940 | Not Available | Positive | 8280 - 9413 | 41194.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
