Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 30s ribosomal protein s6 | VO01_RS18005 | Not Available | Negative | 475220 - 475594 | 13210.2 |
| alpha-ketoglutarate-dependent dioxygenase alkb | VO01_RS02305 | Not Available | Negative | 476167 - 476799 | 23011.5 |
| pr6pr family membrane protein | VO01_RS02310 | Not Available | Negative | 476863 - 477543 | 24161.0 |
| biotin/lipoate a/b protein ligase family protein | VO01_RS02315 | Not Available | Positive | 477622 - 478671 | 38018.1 |
| gnat family n-acetyltransferase | VO01_RS02320 | Not Available | Negative | 478930 - 479214 | 10331.0 |
| amidase domain-containing protein | VO01_RS02325 | Not Available | Positive | 479318 - 480214 | 31484.5 |
| duf2809 domain-containing protein | VO01_RS02330 | Not Available | Negative | 480211 - 480705 | 17525.6 |
| phosphoglucomutase (alpha-d-glucose-1,6-bisphosphate-dependent) | VO01_RS02335 | Not Available | Negative | 480769 - 482409 | 58342.3 |
| prephenate dehydratase | VO01_RS02340 | Not Available | Positive | 482459 - 483415 | 33691.9 |
| serine--trna ligase | VO01_RS02345 | Not Available | Positive | 483467 - 484747 | 46522.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
