Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyltransferase | VO01_RS02245 | Not Available | Positive | 464577 - 466805 | 77378.5 |
| nucleotide disphospho-sugar-binding domain-containing protein | VO01_RS02250 | Not Available | Positive | 466802 - 468127 | 47020.5 |
| hypothetical protein | VO01_RS17450 | Not Available | Positive | 468243 - 468416 | 6141.77 |
| circularly permuted type 2 atp-grasp protein | VO01_RS02265 | Not Available | Positive | 468496 - 470193 | 61308.9 |
| alpha-e domain-containing protein | VO01_RS02270 | Not Available | Positive | 470199 - 471128 | 34960.4 |
| transglutaminase n-terminal domain-containing protein | VO01_RS02275 | Not Available | Positive | 471125 - 471970 | 31504.0 |
| alpha/beta fold hydrolase | VO01_RS02280 | Not Available | Positive | 472008 - 472904 | 32634.7 |
| gnat family n-acetyltransferase | VO01_RS02285 | Not Available | Positive | 472901 - 473401 | 17444.8 |
| hypothetical protein | VO01_RS17295 | Not Available | Negative | 473502 - 473678 | 6225.58 |
| helix-turn-helix domain-containing protein | VO01_RS17700 | Not Available | Positive | 474457 - 475146 | 24719.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
