Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| had-iia family hydrolase | VO01_RS02195 | Not Available | Negative | 454048 - 454845 | 28393.9 |
| metallophosphoesterase | VO01_RS02200 | Not Available | Positive | 454975 - 455880 | 31339.3 |
| csbd family protein | VO01_RS02205 | Not Available | Negative | 455953 - 456123 | 5885.85 |
| pld nuclease n-terminal domain-containing protein | VO01_RS02210 | Not Available | Positive | 456308 - 456727 | 15398.7 |
| recq family atp-dependent dna helicase | VO01_RS02215 | Not Available | Positive | 456814 - 458988 | 77923.6 |
| dna-methyltransferase | VO01_RS02220 | Not Available | Negative | 459002 - 459997 | 37255.8 |
| duf4190 domain-containing protein | VO01_RS02225 | Not Available | Positive | 460144 - 461046 | 30077.8 |
| kynureninase | VO01_RS02230 | Not Available | Positive | 461125 - 462357 | 44460.1 |
| sdr family nad(p)-dependent oxidoreductase | VO01_RS02235 | Not Available | Negative | 462437 - 463231 | 27748.1 |
| gfo/idh/moca family protein | VO01_RS02240 | Not Available | Negative | 463283 - 464377 | 39402.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
