Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma factor | VO01_RS02155 | Not Available | Negative | 445590 - 446144 | 20652.5 |
| asp23/gls24 family envelope stress response protein | VO01_RS02160 | Not Available | Positive | 446277 - 446741 | 15402.1 |
| 30s ribosomal protein s6 | VO01_RS17690 | Not Available | Positive | 446971 - 447267 | 10348.5 |
| nad-binding protein | VO01_RS17695 | Not Available | Positive | 447392 - 447811 | 13768.3 |
| orotate phosphoribosyltransferase | VO01_RS02170 | Not Available | Positive | 447878 - 448432 | 19536.4 |
| septum formation family protein | VO01_RS02175 | Not Available | Positive | 448432 - 450504 | 68843.7 |
| mfs transporter | VO01_RS02180 | Not Available | Positive | 450622 - 451887 | 42021.0 |
| 30s ribosomal protein s6 | VO01_RS02185 | Not Available | Negative | 451888 - 452232 | 11973.4 |
| hypothetical protein | VO01_RS17005 | Not Available | Positive | 452464 - 452883 | 14428.9 |
| duf2599 domain-containing protein | VO01_RS16585 | Not Available | Positive | 452971 - 453975 | 34708.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
