Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| asch domain-containing protein | VO01_RS02105 | Not Available | Negative | 437027 - 437461 | 15379.8 |
| sdr family oxidoreductase | VO01_RS02110 | Not Available | Positive | 437548 - 438456 | 32171.4 |
| mosc domain-containing protein | VO01_RS02115 | Not Available | Negative | 438482 - 439051 | 20311.4 |
| sensor histidine kinase | VO01_RS02120 | Not Available | Positive | 439228 - 440859 | 57709.9 |
| hpt domain-containing protein | VO01_RS17685 | Not Available | Positive | 441545 - 441781 | 8325.97 |
| response regulator transcription factor | VO01_RS02130 | Not Available | Negative | 441980 - 442849 | 30729.1 |
| hypothetical protein | VO01_RS02135 | Not Available | Negative | 442980 - 443582 | 21014.8 |
| exodeoxyribonuclease iii | VO01_RS02140 | Not Available | Negative | 443671 - 444507 | 31032.6 |
| hypothetical protein | VO01_RS02145 | Not Available | Negative | 444561 - 444959 | 13037.5 |
| asp23/gls24 family envelope stress response protein | VO01_RS02150 | Not Available | Negative | 444943 - 445599 | 23466.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
