Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mdr family mfs transporter | VO01_RS02065 | Not Available | Positive | 427709 - 429412 | 59342.1 |
| srpbcc family protein | VO01_RS02070 | Not Available | Positive | 429532 - 429975 | 15952.0 |
| histidine-type phosphatase | VO01_RS02075 | Not Available | Negative | 429972 - 431660 | 58926.8 |
| aec family transporter | VO01_RS02080 | Not Available | Positive | 431868 - 432797 | 31772.1 |
| hypothetical protein | VO01_RS17445 | Not Available | Negative | 432794 - 432952 | 5983.65 |
| gnat family n-acetyltransferase | VO01_RS02085 | Not Available | Negative | 433090 - 433566 | 16595.8 |
| nad-dependent epimerase/dehydratase family protein | VO01_RS02090 | Not Available | Negative | 433671 - 434642 | 33304.7 |
| 30s ribosomal protein s6 | VO01_RS17680 | Not Available | Positive | 434811 - 435104 | 10526.7 |
| hypothetical protein | VO01_RS02095 | Not Available | Negative | 435392 - 436108 | 24542.5 |
| endo alpha-1,4 polygalactosaminidase | VO01_RS02100 | Not Available | Negative | 436142 - 437017 | 30361.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
