Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pentapeptide repeat-containing protein | VO01_RS01970 | Not Available | Positive | 411717 - 412379 | 23971.6 |
| hypothetical protein | VO01_RS17675 | Not Available | Negative | 412324 - 413154 | 28831.1 |
| sam-dependent methyltransferase | VO01_RS01980 | Not Available | Positive | 413207 - 413953 | 26846.2 |
| marr family winged helix-turn-helix transcriptional regulator | VO01_RS01985 | Not Available | Negative | 414002 - 414595 | 19906.1 |
| mdr family mfs transporter | VO01_RS01990 | Not Available | Negative | 414592 - 416349 | 60800.1 |
| voc family protein | VO01_RS01995 | Not Available | Positive | 416517 - 416873 | 12735.7 |
| is481-like element is1122 family transposase | VO01_RS02000 | Not Available | Positive | 416971 - 417933 | 36074.7 |
| duf1905 domain-containing protein | VO01_RS02005 | Not Available | Negative | 417967 - 418272 | 11366.6 |
| adenylyl-sulfate kinase | VO01_RS02010 | Not Available | Negative | 418296 - 418814 | 18029.5 |
| hypothetical protein | VO01_RS02015 | Not Available | Negative | 418821 - 419723 | 32486.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
