Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| voc family protein | VO01_RS01870 | Not Available | Positive | 387371 - 387802 | 15160.9 |
| epoxide hydrolase family protein | VO01_RS01875 | Not Available | Negative | 387812 - 388936 | 41712.2 |
| abc transporter permease | VO01_RS01880 | Not Available | Negative | 388999 - 390057 | 36428.8 |
| abc transporter permease | VO01_RS01885 | Not Available | Negative | 390054 - 391136 | 36728.2 |
| sugar abc transporter atp-binding protein | VO01_RS01890 | Not Available | Negative | 391133 - 392719 | 56864.4 |
| abc transporter substrate-binding protein | VO01_RS01895 | Not Available | Negative | 392813 - 393817 | 34664.9 |
| sugar abc transporter atp-binding protein | VO01_RS01900 | Not Available | Negative | 393966 - 395648 | 60080.5 |
| laci family dna-binding transcriptional regulator | VO01_RS01905 | Not Available | Negative | 395774 - 396796 | 36906.1 |
| manganese catalase family protein | VO01_RS01910 | Not Available | Positive | 397057 - 398007 | 34215.4 |
| gaf domain-containing protein | VO01_RS16265 | Not Available | Positive | 398277 - 399509 | 44214.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
