Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna (adenosine(37)-n6)-dimethylallyltransferase miaa | VO01_RS16825 | Not Available | Positive | 38559 - 39605 | 38260.6 |
| hypothetical protein | VO01_RS15550 | Not Available | Positive | 40939 - 41286 | 12003.0 |
| hypothetical protein | VO01_RS17180 | Not Available | Negative | 41695 - 42090 | 13555.1 |
| recombinase family protein | VO01_RS15560 | Not Available | Negative | 42087 - 42701 | 21968.3 |
| recombinase family protein | VO01_RS15565 | Not Available | Positive | 42956 - 43288 | 11554.9 |
| hypothetical protein | VO01_RS17185 | Not Available | Negative | 43298 - 44212 | 31995.1 |
| hypothetical protein | VO01_RS15575 | Not Available | Positive | 45179 - 45409 | 8495.25 |
| replication protein | VO01_RS15580 | Not Available | Positive | 45668 - 47233 | 56920.7 |
| hypothetical protein | VO01_RS17195 | Not Available | Positive | 1 - 498 | 17541.7 |
| hypothetical protein | VO01_RS15590 | Not Available | Negative | 671 - 979 | 11729.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
