Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | VO01_RS01770 | Not Available | Positive | 368290 - 368712 | 14107.5 |
| smp-30/gluconolactonase/lre family protein | VO01_RS01775 | Not Available | Negative | 368703 - 369593 | 31273.8 |
| sdr family nad(p)-dependent oxidoreductase | VO01_RS01780 | Not Available | Negative | 369590 - 370399 | 27901.4 |
| sdr family oxidoreductase | VO01_RS01785 | Not Available | Positive | 370452 - 371234 | 26813.6 |
| mfs transporter | VO01_RS01790 | Not Available | Positive | 371272 - 372288 | 36315.8 |
| response regulator | VO01_RS01795 | Not Available | Negative | 372593 - 373333 | 26162.4 |
| sensor histidine kinase | VO01_RS01800 | Not Available | Negative | 373330 - 374739 | 50401.9 |
| rhamnogalacturonan lyase | VO01_RS01805 | Not Available | Negative | 374804 - 376825 | 70513.0 |
| mfs transporter | VO01_RS01810 | Not Available | Positive | 377190 - 378758 | 53380.9 |
| alpha/beta fold hydrolase | VO01_RS01815 | Not Available | Negative | 378837 - 379685 | 29086.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
