Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| threonine aldolase family protein | VO01_RS01725 | Not Available | Negative | 359864 - 360973 | 39480.4 |
| hypothetical protein | VO01_RS17665 | Not Available | Negative | 361002 - 361142 | 4941.95 |
| 30s ribosomal protein s6 | VO01_RS18085 | Not Available | Negative | 361294 - 361641 | 12740.9 |
| nad(p)/fad-dependent oxidoreductase | VO01_RS01735 | Not Available | Negative | 361602 - 362870 | 45364.0 |
| asp23/gls24 family envelope stress response protein | VO01_RS01740 | Not Available | Positive | 363122 - 363568 | 15283.7 |
| aquaporin z | VO01_RS01745 | Not Available | Positive | 363687 - 364505 | 26589.1 |
| asp23/gls24 family envelope stress response protein | VO01_RS01750 | Not Available | Positive | 364574 - 365503 | 31300.3 |
| duf805 domain-containing protein | VO01_RS01755 | Not Available | Negative | 365558 - 365998 | 16377.6 |
| abc transporter permease | VO01_RS01760 | Not Available | Negative | 366087 - 367217 | 39345.3 |
| abc transporter atp-binding protein | VO01_RS01765 | Not Available | Negative | 367214 - 368095 | 32032.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
