Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter substrate-binding protein | VO01_RS01650 | Not Available | Positive | 340711 - 341997 | 44694.8 |
| carbohydrate abc transporter permease | VO01_RS01655 | Not Available | Positive | 341994 - 342944 | 34299.9 |
| carbohydrate abc transporter permease | VO01_RS01660 | Not Available | Positive | 342941 - 343846 | 32032.9 |
| laci family dna-binding transcriptional regulator | VO01_RS01665 | Not Available | Positive | 343938 - 344957 | 36362.5 |
| hypothetical protein | VO01_RS01670 | Not Available | Positive | 345025 - 345237 | 7598.72 |
| abc transporter substrate-binding protein | VO01_RS01675 | Not Available | Positive | 345303 - 346358 | 37841.4 |
| iron abc transporter permease | VO01_RS01680 | Not Available | Positive | 346391 - 347431 | 35206.1 |
| abc transporter atp-binding protein | VO01_RS01685 | Not Available | Positive | 347428 - 348198 | 27402.9 |
| is481-like element is1122 family transposase | VO01_RS01690 | Not Available | Positive | 348296 - 349255 | 36001.6 |
| nad-dependent epimerase/dehydratase family protein | VO01_RS01695 | Not Available | Positive | 349349 - 350149 | 28045.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
