Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 6-phospho-beta-glucosidase | VO01_RS01600 | Not Available | Negative | 327035 - 328378 | 48448.7 |
| deor/glpr family dna-binding transcription regulator | VO01_RS01605 | Not Available | Negative | 328375 - 329121 | 26485.5 |
| carbohydrate kinase family protein | VO01_RS01610 | Not Available | Positive | 329329 - 330351 | 34469.5 |
| abc transporter substrate-binding protein | VO01_RS01615 | Not Available | Positive | 330404 - 331690 | 44662.0 |
| carbohydrate abc transporter permease | VO01_RS01620 | Not Available | Positive | 331687 - 332685 | 35807.9 |
| carbohydrate abc transporter permease | VO01_RS01625 | Not Available | Positive | 332682 - 333611 | 33406.4 |
| glucosamine-6-phosphate deaminase | VO01_RS01630 | Not Available | Positive | 333608 - 334372 | 25951.0 |
| glycoside hydrolase family 2 tim barrel-domain containing protein | VO01_RS01635 | Not Available | Positive | 334445 - 337435 | 108412.0 |
| nadph-dependent fmn reductase | VO01_RS01640 | Not Available | Positive | 337558 - 338130 | 20059.7 |
| beta-l-arabinofuranosidase domain-containing protein | VO01_RS01645 | Not Available | Negative | 338194 - 340527 | 83393.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
