Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | VO01_RS01550 | Not Available | Negative | 317626 - 318000 | 13029.6 |
| duf2273 domain-containing protein | VO01_RS01555 | Not Available | Negative | 317997 - 318185 | 6322.03 |
| asp23/gls24 family envelope stress response protein | VO01_RS01560 | Not Available | Negative | 318182 - 318619 | 14845.3 |
| helix-turn-helix transcriptional regulator | VO01_RS01565 | Not Available | Negative | 318826 - 320007 | 42393.7 |
| ferritin-like domain-containing protein | VO01_RS01570 | Not Available | Negative | 320179 - 321120 | 32279.9 |
| tetr/acrr family transcriptional regulator | VO01_RS16540 | Not Available | Negative | 321249 - 321755 | 18386.2 |
| hypothetical protein | VO01_RS17565 | Not Available | Negative | 322130 - 322381 | 8364.9 |
| hypothetical protein | VO01_RS01585 | Not Available | Negative | 322524 - 323066 | 18649.6 |
| hypothetical protein | VO01_RS01590 | Not Available | Positive | 323272 - 323709 | 14985.5 |
| alpha-mannosidase | VO01_RS01595 | Not Available | Negative | 323785 - 326970 | 116862.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
