Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha-n-arabinofuranosidase | VO01_RS01405 | Not Available | Positive | 271216 - 272757 | 56014.8 |
| dna cytosine methyltransferase | VO01_RS16530 | Not Available | Positive | 273113 - 274075 | 34502.1 |
| ngomiv family type ii restriction endonuclease | VO01_RS17560 | Not Available | Positive | 274072 - 274434 | 12869.3 |
| gtp-binding protein | VO01_RS01415 | Not Available | Positive | 275333 - 276406 | 36570.4 |
| hypothetical protein | VO01_RS01420 | Not Available | Negative | 276497 - 276721 | 7383.68 |
| nad(p)/fad-dependent oxidoreductase | VO01_RS01425 | Not Available | Positive | 276936 - 277940 | 34099.9 |
| atp-dependent clp protease atp-binding subunit | VO01_RS01430 | Not Available | Positive | 278005 - 280197 | 80577.3 |
| alpha-galactosidase | VO01_RS01435 | Not Available | Negative | 280264 - 282447 | 78948.5 |
| hypothetical protein | VO01_RS01440 | Not Available | Negative | 282532 - 282882 | 12160.4 |
| aldo/keto reductase | VO01_RS01445 | Not Available | Positive | 282999 - 284003 | 36075.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
