Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| recombinase family protein | VO01_RS15500 | Not Available | Positive | 29128 - 29820 | 24486.1 |
| mind/para family protein | VO01_RS15505 | Not Available | Positive | 29718 - 30743 | 37155.6 |
| hypothetical protein | VO01_RS15510 | Not Available | Positive | 30752 - 31366 | 23168.4 |
| hypothetical protein | VO01_RS15515 | Not Available | Positive | 31462 - 31812 | 12069.0 |
| single-stranded dna-binding protein | VO01_RS15520 | Not Available | Positive | 31843 - 32238 | 14551.2 |
| hnh endonuclease family protein | VO01_RS15525 | Not Available | Positive | 32235 - 33026 | 27514.0 |
| hypothetical protein | VO01_RS17175 | Not Available | Negative | 34151 - 34570 | 15430.2 |
| mfs transporter | VO01_RS15535 | Not Available | Positive | 34683 - 35900 | 40646.4 |
| duf3892 domain-containing protein | VO01_RS15540 | Not Available | Positive | 36216 - 36479 | 9749.25 |
| gmc oxidoreductase | VO01_RS16820 | Not Available | Positive | 36970 - 38562 | 57280.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
