Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| helix-turn-helix transcriptional regulator | VO01_RS01350 | Not Available | Negative | 264772 - 265629 | 31476.3 |
| sdr family nad(p)-dependent oxidoreductase | VO01_RS01355 | Not Available | Positive | 265731 - 266411 | 23315.5 |
| gnat family n-acetyltransferase | VO01_RS01360 | Not Available | Positive | 266441 - 266983 | 18531.9 |
| polyketide cyclase | VO01_RS01365 | Not Available | Positive | 266980 - 267378 | 13984.7 |
| gnat family n-acetyltransferase | VO01_RS01370 | Not Available | Positive | 267425 - 267991 | 20758.4 |
| hypothetical protein | VO01_RS01375 | Not Available | Negative | 267957 - 268256 | 10614.3 |
| serine hydrolase domain-containing protein | VO01_RS01380 | Not Available | Positive | 268354 - 269253 | 32134.2 |
| rhodanese-like domain-containing protein | VO01_RS01385 | Not Available | Negative | 269296 - 269715 | 14674.2 |
| lrp/asnc family transcriptional regulator | VO01_RS17555 | Not Available | Positive | 269714 - 270535 | 28048.3 |
| nudix domain-containing protein | VO01_RS01400 | Not Available | Negative | 270537 - 271052 | 18367.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
