Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dmt family transporter | VO01_RS01240 | Not Available | Negative | 236051 - 237046 | 32968.7 |
| tetr/acrr family transcriptional regulator | VO01_RS01245 | Not Available | Positive | 237080 - 237706 | 22178.7 |
| dienelactone hydrolase family protein | VO01_RS01250 | Not Available | Negative | 237762 - 238871 | 38192.8 |
| tetr/acrr family transcriptional regulator | VO01_RS01255 | Not Available | Negative | 239072 - 239704 | 22650.7 |
| nuclear transport factor 2 family protein | VO01_RS01260 | Not Available | Positive | 239789 - 240199 | 14500.3 |
| ycei family protein | VO01_RS01265 | Not Available | Negative | 240287 - 240979 | 23241.3 |
| pectinesterase family protein | VO01_RS16260 | Not Available | Negative | 241193 - 249421 | 277394.0 |
| sigma-70 family rna polymerase sigma factor | VO01_RS01280 | Not Available | Positive | 249712 - 250218 | 18709.3 |
| anti-sigma factor family protein | VO01_RS01285 | Not Available | Positive | 250215 - 251012 | 27569.4 |
| helix-turn-helix domain-containing protein | VO01_RS01290 | Not Available | Positive | 251056 - 251631 | 21079.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
