Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | VO01_RS01185 | Not Available | Negative | 228921 - 229922 | 33362.8 |
| gamma subclass chorismate mutase aroq | VO01_RS01190 | Not Available | Positive | 230093 - 230683 | 20278.1 |
| 30s ribosomal protein s6 | VO01_RS01195 | Not Available | Negative | 230800 - 230993 | 6638.05 |
| fbp domain-containing protein | VO01_RS01200 | Not Available | Negative | 231054 - 231545 | 17605.0 |
| msmeg_6728 family protein | VO01_RS01210 | Not Available | Negative | 231782 - 232231 | 17001.3 |
| acetyltransferase | VO01_RS01215 | Not Available | Negative | 232266 - 233066 | 28458.8 |
| glycoside hydrolase family 95-like protein | VO01_RS01220 | Not Available | Negative | 233072 - 233743 | 22845.4 |
| hypothetical protein | VO01_RS17655 | Not Available | Positive | 234047 - 234553 | 16845.8 |
| atpase aaa | VO01_RS01230 | Not Available | Positive | 234994 - 235599 | 22770.6 |
| hypothetical protein | VO01_RS01235 | Not Available | Negative | 235566 - 236033 | 15589.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
