Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | VO01_RS01140 | Not Available | Negative | 220265 - 220735 | 16389.5 |
| hypothetical protein | VO01_RS17650 | Not Available | Negative | 220672 - 220965 | 10192.1 |
| dihydrofolate reductase family protein | VO01_RS01145 | Not Available | Negative | 220968 - 221522 | 19836.6 |
| abc transporter substrate-binding protein | VO01_RS01150 | Not Available | Positive | 221752 - 222990 | 43133.5 |
| carbohydrate abc transporter permease | VO01_RS01155 | Not Available | Positive | 222990 - 223979 | 35756.8 |
| carbohydrate abc transporter permease | VO01_RS01160 | Not Available | Positive | 223972 - 224853 | 31144.5 |
| thua domain-containing protein | VO01_RS01165 | Not Available | Positive | 224936 - 225706 | 29365.5 |
| gfo/idh/moca family protein | VO01_RS01170 | Not Available | Positive | 225703 - 226914 | 42525.8 |
| rok family transcriptional regulator | VO01_RS01175 | Not Available | Positive | 226935 - 228233 | 44392.1 |
| had family hydrolase | VO01_RS01180 | Not Available | Positive | 228230 - 228886 | 22974.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
