Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| three-helix bundle dimerization domain-containing protein | VO01_RS16170 | Not Available | Positive | 90915 - 91130 | 8212.66 |
| hypothetical protein | VO01_RS17405 | Not Available | Negative | 91365 - 91511 | 5255.32 |
| hypothetical protein | VO01_RS16180 | Not Available | Positive | 95334 - 95822 | 18475.8 |
| hypothetical protein | VO01_RS17260 | Not Available | Negative | 96100 - 96306 | 7790.25 |
| mobf family relaxase | VO01_RS18075 | Not Available | Positive | 96499 - 97104 | 22102.1 |
| aaa family atpase | VO01_RS16185 | Not Available | Positive | 97369 - 99021 | 58732.1 |
| arsr/smtb family transcription factor | VO01_RS16190 | Not Available | Negative | 99018 - 99335 | 11635.5 |
| hypothetical protein | VO01_RS16195 | Not Available | Positive | 99394 - 99726 | 11610.0 |
| hypothetical protein | VO01_RS17265 | Not Available | Positive | 99791 - 100030 | 8278.11 |
| hypothetical protein | VO01_RS16200 | Not Available | Positive | 100280 - 100525 | 8593.24 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
