Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tetr/acrr family transcriptional regulator | VO01_RS16485 | Not Available | Positive | 82467 - 83189 | 26232.5 |
| hypothetical protein | VO01_RS16125 | Not Available | Negative | 83784 - 84119 | 12444.1 |
| mobf family relaxase | VO01_RS16130 | Not Available | Negative | 84223 - 84852 | 22638.1 |
| s26 family signal peptidase | VO01_RS16135 | Not Available | Negative | 85186 - 85428 | 8263.38 |
| hypothetical protein | VO01_RS16140 | Not Available | Negative | 85553 - 86458 | 30718.0 |
| tasa family protein | VO01_RS18070 | Not Available | Negative | 86455 - 87048 | 19692.3 |
| alternate-type signal peptide domain-containing protein | VO01_RS16150 | Not Available | Negative | 87167 - 87712 | 18104.4 |
| hypothetical protein | VO01_RS16155 | Not Available | Positive | 88800 - 89024 | 7427.32 |
| hypothetical protein | VO01_RS16160 | Not Available | Negative | 89160 - 89345 | 6145.03 |
| hypothetical protein | VO01_RS16165 | Not Available | Negative | 89763 - 90515 | 26087.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
