Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mfs transporter | VO01_RS17245 | Not Available | Positive | 61316 - 62089 | 26017.6 |
| mfs transporter | VO01_RS17250 | Not Available | Positive | 62044 - 62622 | 19372.5 |
| histone-like nucleoid-structuring protein lsr2 | VO01_RS16045 | Not Available | Negative | 62684 - 63028 | 12538.7 |
| helix-turn-helix domain-containing protein | VO01_RS16050 | Not Available | Positive | 63089 - 63550 | 17269.5 |
| sos response-associated peptidase | VO01_RS16055 | Not Available | Negative | 63597 - 64280 | 25433.0 |
| trypsin-like serine protease | VO01_RS17965 | Not Available | Negative | 66378 - 67229 | 30203.4 |
| hypothetical protein | VO01_RS16465 | Not Available | Negative | 67290 - 67799 | 18638.2 |
| relaxase/mobilization nuclease domain-containing protein | VO01_RS16470 | Not Available | Positive | 67940 - 68740 | 29910.8 |
| hypothetical protein | VO01_RS16480 | Not Available | Negative | 69067 - 69636 | 19508.3 |
| hypothetical protein | VO01_RS16070 | Not Available | Negative | 70139 - 70675 | 18819.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
