Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | VO01_RS01040 | Not Available | Negative | 203933 - 204193 | 8967.77 |
| hypothetical protein | VO01_RS01045 | Not Available | Negative | 204262 - 204480 | 7507.31 |
| methylated-dna--[protein]-cysteine s-methyltransferase | VO01_RS01050 | Not Available | Negative | 204531 - 205157 | 22455.8 |
| rna polymerase sigma factor | VO01_RS01055 | Not Available | Negative | 205154 - 205678 | 18352.0 |
| response regulator transcription factor | VO01_RS01060 | Not Available | Positive | 206003 - 206764 | 26808.2 |
| hypothetical protein | VO01_RS01065 | Not Available | Positive | 207033 - 208292 | 41721.5 |
| gfo/idh/moca family protein | VO01_RS01070 | Not Available | Positive | 208470 - 209684 | 43375.0 |
| hypothetical protein | VO01_RS01075 | Not Available | Positive | 209735 - 210421 | 22248.6 |
| ycni family protein | VO01_RS01080 | Not Available | Positive | 210601 - 211350 | 24339.0 |
| pepsy-associated tm helix domain-containing protein | VO01_RS01085 | Not Available | Positive | 211347 - 212834 | 51158.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
